Sign up for updatesKnown genes with T-DNA insert
The table below lists genes with high homology to Brachypodium tagged genes. This informs on the likely function of the tagged Brachypodium genes. Homology was assessed using BLAST search routine against sequences available in online databases (e.g. GenBank, EMBL).
An additional list of putative orthologues (predicted by EnsemblPlants) to Brachypodium tagged genes is also available.
Validation of T-DNA insertions and T2 seed production are ongoing. T1 and/or T2 seeds are available from all T-DNA insertion lines (genotype Bd21) and can be requested online from the John Innes Centre.
Table: List of known genes containing a T-DNA insert
Download detailed list of known genes 
(updated January 2011)
| Known genes (species) with high homology to Brachypodium tagged genes | Homology |
|---|---|
| A | |
| ABA responsive element binding factor 3 - ABF3 (Hordeum vulgare) | expect = 2e-07 |
| actin-related protein 2 - ARP2 (Arabidopsis thaliana) | expect = 4e-25 |
| AGAMOUS-like protein (Zea mays) | expect = 2e-20 |
| alpha-glucosidase - Agl2 (Hordeum vulgare) | expect = 6e-04 |
| alpha-L-fucosidase 2 precursor (Zea mays) | expect = 5e-16 |
| aquaporin (PIP2) gene (Triticum aestivum) | expect = 3e-59 |
| B | |
| beta-carotene hydroxylase (Zea mays) | expect = 4e-10 |
| C | |
| CatA gene for catalase (Oryza sativa) | expect = 2e-74 |
| chloroplast thylakoidal processing peptidase (Oryza sativa) | expect = 3e-36 |
| cytochrome c oxidase copper chaperone (Zea mays) | expect = 5e-47 |
| cytochrome oxidase subunit I - coxI (Oryza sativa) | expect = 1e-09 |
| D | |
| dof166 gene for dof zinc finger protein (Hordeum vulgare) | expect = 1e-41 |
| dTDP-glucose 4-6-dehydratase (Saccharum sp.) | expect = 8e-38 |
| E | |
| ENOD40 gene (Lolium perenne) | expect = e-124 |
| esterase/lipase/thioesterase family protein (Hordeum vulgare) | expect = 1e-27 |
| eukaryotic initiation factor 4A - eIF4A-1 (Oryza sativa) | expect = 1e-105 |
| extensin similar (Oryza sativa) | expect = 1e-46 |
| extra-large G-protein - XLG (Arabidopsis) | expect = 1e-07 |
| F | |
| ferredoxin-thioredoxin reductase - FTR (Zea mays) | expect = 2e-45 |
| Ferric reductase (Nicotiana sp.) | expect = 7e-07 |
| fiber protein Fb14, similar (Zea mays) | expect = 5e-56 |
| galactosyltransferase (Hordeum vulgare) | expect = 4e-75 |
| G | |
| GTP-binding protein - gmr2 (Glycine max) | expect = 7e-59 |
| H | |
| hemoglobin 2 - hb2 gene (Oryza sativa) | expect = 8e-26 |
| 3-hydroxyacid dehydrogenase, similar (Glycine max) | expect = 1e-09 |
| L | |
| LAs17 binding protein-like (Ananas comosus) | expect = 3e-38 |
| LIM transcription factor homolog - lim1 (Zea mays) | expect = 2e-25 |
| lipoxygenase 1 gene (Hordeum vulgare) | expect = e-106 |
| lipoxygenase isoenzyme 1 - Lox:Hv1 (Hordeum vulgare) | expect = 1e-09 |
| M | |
| Mannase, endo-1,4-beta-mannosidase protein 2 (Prunus persica) | expect = 3e-21 |
| mitochondrial carrier protein - RIM2 (Glycine max) | expect = 8e-21 |
| N | |
| NAM protein (Oryza sativa) | expect = 3e-10 |
| NBS-LRR disease resistance protein-like gene (Lolium perenne) | expect = 3e-08 |
| nodulation-induced gene MtN21 (Sorghum bicolor) | expect = 2e-18 |
| nuclear encoded chloroplastic glutathione reductase - HvGR1 (Hordeum vulgare) | expect = 7e-59 |
| nuclear encoded mitochondrial import inner membrane translocase subunit - TIM14 (Zea mays) | expect = 3e-21 |
| O | |
| oligopeptidase A (At5g65620) similar (Arabidopsis thaliana) | expect = 8e-17 |
| P | |
| pdr1 gene for PDR-like ABC transporter (Oryza sativa) | expect = 2e-19 |
| Pib gene, similar (Oryza sativa) | expect = 1e-21 |
| PibH8 (Oryza sativa) | expect = 7e-09 |
| pollen extensin-like protein - Pex2 (Zea mays) | expect = 2e-44 |
| proline rich extension-like receptor kinase-1 (Oryza sativa) | expect = 1e-22 |
| 26S proteasome regulatory particle triple-A ATPase subunit1 - OsRPT1 (Oryza sativa) | expect = 1e-27 |
| Protein kinase (Zea mays) | expect = 2e-05 |
| PTR2 family peptide transporter - At2g40460 (Arabidopsis thaliana) | expect = 4e-15 |
| R | |
| ras-related protein - ARA-4 (Zea mays) | expect = 1e-94 |
| RNA polymerase - Rpb2 (Prunus persica) | expect = 2e-24 |
| Roc4 mRNA for GL2-type homeodomain protein (Oryza sativa) | expect = 1e-06 |
| S | |
| senescence-associated protein - DIN1 (Zea mays) | expect = 3e-08 |
| serine carboxypeptidase II-1 (Hordeum vulgare) | expect = 8e-40 |
| SMC4 protein (Oryza sativa) | expect = 1e-17 |
| splicing factor (Saccharum sp.) | expect = 5e-81 ; |
| systemin receptor - SR160 precursor (Zea mays) | expect = 4e-46 |
| T | |
| TAA1b gene for fatty acyl coA reductase (Triticum aestivum) | expect = 2e-10 |
| thioredoxin-like 5 (Oryza sativa) | epect = 3e-28 |
| transketolase, chloroplast precursor (Glycine max) | expect = 8e-07 |
| U | |
| ubiquitin - mub2 (Hordeum vulgare) | expect = 3e-14 |
| UDP-N-acetylglucosamine transferase subunit - alg13 (Zea mays) | xpect = 1e-48 |
| uroporphyrinogen III synthase - urosIII (Hordeum vulgare) | expect = 2e-12 |
| Z | |
| zinc finger (DHHC type) family protein (Prunus persica) | expect = 7e-07 |
Details of T-DNA lines and insertions are available in the detailed list of known genes (updated January 2011)
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